Four host glue units fetched a secret from swarm-bao and rendered it
with `> path; chmod`: a reader racing the write could see a truncated
file, and briefly one at the wrong mode before the chmod landed.
glue-matrix-bao-token.nix, glue-queue-agent-credential.nix (both
files), swarm-grafana.nix and swarm-otel.nix now write to a same-
directory temp file, set its final mode/owner, then `mv -f` it over
the target — a shared `atomic_write_secret` helper
(nix/host-modules/lib/atomic-write-secret.nix) so the five call sites
share one implementation.
The first-boot `/root/.claude` migration in nix/agent-modules/user.nix
wrote its done-marker unconditionally, so a failed `cp` (disk full,
permission error) left the marker behind and no boot ever retried the
copy. The marker is now written only when there was nothing to
migrate or the copy succeeded; `cp -an`'s no-clobber semantics already
make a retry after a partial copy safe.
Refs #4723
The topology doc keeps its filename and its second half (manager
special-casing, harness unit shape) — both are cross-referenced from
other pages and neither is about the parent field. Its first half is
rewritten: what topology.json is now, and a table of what the removal
took with it, so a reader who finds `<parent>` or `set-parent` in an old
issue thread learns it went away rather than moved.
The dashboard's tree-rendering section is marked dormant rather than
deleted: the walk is still in swarm.js and retiring it is the frontend
owner's call.
Every per-agent harness option lived at the top-level `hyperhive.*` while
the host tier has always been `services.hyperhive.*`. Move all 52 agent-tier
option leaves (33 top-level names across 16 modules) to
`services.hyperhive.agent.*`, repoint every read, and keep existing agent
configs evaluating through one `mkRenamedOptionModule` per old leaf path in
the new nix/agent-modules/renamed-options.nix.
The shims are per leaf rather than per namespace: `user`, `mcp`, `otel`,
`queue`, `docs`, `forge`, `frontend`, `github`, `gui`, `logs`, `matrix` and
`cargo` are plain attrsets of declarations, not submodule-typed options, so
a parent-path rename would not reach their children. Three read-only
options (`frontend.mergedDist`, `queue.clientIdFile`,
`queue.clientSecretFile`) deliberately get no shim — a rename contributes a
definition, which a read-only option refuses; the exclusions are commented
in place.
Refs #4473
Per mara's go-ahead on hyperhive#3902 ("getting started is good, but
terminal rendering does not go in there i think"):
Moved 21 top-level docs/*.md files into 7 new topic subdirectories
(existing web-ui/, turn-loop/, swarm/, tools/, crates/ untouched):
getting-started/ setup.md
agent-lifecycle/ agent-hierarchy.md, approvals.md, persistence.md
trust-boundary/ boundary.md, security.md
integrations/ forge.md, matrix.md, github.md, knowledge.md
networking/ gateway.md, network.md, snapshot-store.md
scheduler/ jobq.md, coordinator.md, ci.md, observability.md
process/ conventions.md, gotchas.md, pr-review-gate.md
web-ui/ terminal-rendering.md (moved into the EXISTING dir,
per mara's correction to the original getting-started
guess -- it's UI implementation detail, not onboarding)
The physical layout now matches docs/README.md's own topical headers,
which already amounted to this taxonomy -- see the scoping comment on
the issue for the two findings that motivated this (a genuine
duplication between CLAUDE.md's old "Reading paths" list and
docs/README.md's grouped one, since drifted out of sync with each
other; and the flat layout not matching the grouping we already had).
Fixed every cross-reference this moved across the whole repo (~120
files: docs/ internal links at every depth, Rust doc comments, nix
module option docs, crate READMEs) -- verified two ways: a grep sweep
confirming zero remaining references to any old path, and a script
that resolves every markdown link in docs/**/*.md + CLAUDE.md +
README.md against the filesystem and reports anything that doesn't
exist (zero broken links).
Collapsed CLAUDE.md's "Reading paths" section (the duplicate) down to
a pointer at docs/README.md, now the single index. Rewrote
docs/README.md itself to use the new subdirectory paths and added the
one doc it was missing that CLAUDE.md's old copy had (pr-review-gate.md).
Classified all 22 docs/*.md files first via a haiku subagent (mara's
suggestion) on two axes -- proposed grouping and operator-vs-
implementation focus -- before finalizing the taxonomy; spot-checked
the report and found internal inconsistencies (its classification
table disagreed with its own summary section for a few files), so this
taxonomy is my original proposal + the one correction mara gave
directly, not a blind application of the subagent's table. The
operator-focus data it gathered is still useful for a follow-up
content pass (docs skewing 'mixed' rather than pure operator-facing),
not addressed in this PR -- structure only.
nix fmt clean, both pre-push lints clean.
