Four host glue units fetched a secret from swarm-bao and rendered it
with `> path; chmod`: a reader racing the write could see a truncated
file, and briefly one at the wrong mode before the chmod landed.
glue-matrix-bao-token.nix, glue-queue-agent-credential.nix (both
files), swarm-grafana.nix and swarm-otel.nix now write to a same-
directory temp file, set its final mode/owner, then `mv -f` it over
the target — a shared `atomic_write_secret` helper
(nix/host-modules/lib/atomic-write-secret.nix) so the five call sites
share one implementation.
The first-boot `/root/.claude` migration in nix/agent-modules/user.nix
wrote its done-marker unconditionally, so a failed `cp` (disk full,
permission error) left the marker behind and no boot ever retried the
copy. The marker is now written only when there was nothing to
migrate or the copy succeeded; `cp -an`'s no-clobber semantics already
make a retry after a partial copy safe.
Refs #4723
ed53e9abcc