docs: fold swarm/secrets.md into the credentials reference
secrets.md and credentials-reference.md answered the same question from two pages. secrets.md's text now follows the reference's table and operating notes as a 'Where each secret lives' section, unchanged apart from where it sits. Every link and doc path that named secrets.md (docs, nix comments, crate READMEs) points at credentials-reference.md; anchors are unchanged.
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@ -79,8 +79,8 @@ declarations.
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- **Who mints each credential, who reads it, and how does it rotate — and
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where's that shape headed?** → [`swarm/credentials.md`](swarm/credentials.md)
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(the overview) and [`swarm/credentials-reference.md`](swarm/credentials-reference.md)
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(each credential, current state and target state);
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[`swarm/secrets.md`](swarm/secrets.md) for where each file lives today.
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(each credential, current state and target state, and where each file lives
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today).
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- **How does the secret store come up, who writes its grants, how's it
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sealed?** → [`swarm/bao.md`](swarm/bao.md).
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- **How does an agent get a prompt at set times, and why doesn't it fire
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