docs: sort the top-level directories into five sections by what the reader wants
Every docs directory moves under 1-getting-started, 2-handbook, 4-implementation or 5-project; the options reference (section 3) comes from the website and has no directory here. trust-boundary stays whole under the handbook for now. web-ui, swarm and tools split between handbook and implementation, and the command-line references move to 2-handbook/reference. Links, path references in code and nix, and the docs index follow the moves; no page content changes.
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@ -27,5 +27,5 @@ Foundational shared **newtypes** for the hyperhive workspace. A zero-dependency
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request on the same grounds.
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The crate is deliberately a leaf with the smallest possible dependency footprint
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so anything in the workspace can depend on it. See `docs/process/conventions.md`
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so anything in the workspace can depend on it. See `docs/5-project/process/conventions.md`
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("identity = socket") for how agent identity is modelled across the sockets.
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