docs: sort the top-level directories into five sections by what the reader wants
Every docs directory moves under 1-getting-started, 2-handbook, 4-implementation or 5-project; the options reference (section 3) comes from the website and has no directory here. trust-boundary stays whole under the handbook for now. web-ui, swarm and tools split between handbook and implementation, and the command-line references move to 2-handbook/reference. Links, path references in code and nix, and the docs index follow the moves; no page content changes.
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@ -305,7 +305,7 @@ pub(super) struct MatrixRoomUnread {
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/// on (`services.hyperhive.agent.mcp.matrixHttpPort`'s nix default). Overridable via
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/// `HIVE_MATRIX_HTTP_PORT` for parity with the port options nix already
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/// exposes; unset in practice since a single fixed port is safe (each
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/// agent container is its own network namespace — see docs/networking/network.md).
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/// agent container is its own network namespace — see docs/4-implementation/networking/network.md).
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const DEFAULT_MATRIX_HTTP_PORT: u16 = 8792;
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/// Short request timeout for the local status query below — this must
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@ -449,7 +449,7 @@ pub(super) fn format_matrix_summary(rooms: &[MatrixRoomUnread]) -> String {
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/// (it would be a stale snapshot from before the stop) so the status
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/// line is implicitly `<none>` in that case — but the explicit
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/// `running: no` line tells the caller WHY. See
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/// `docs/turn-loop/mcp.md::Core tools` (`get_agent_meta`).
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/// `docs/4-implementation/turn-loop/mcp.md::Core tools` (`get_agent_meta`).
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#[must_use]
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pub fn format_agent_meta(resp: Result<hive_core_agent_sock::Response, anyhow::Error>) -> String {
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match resp {
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