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docs: sort the top-level directories into five sections by what the reader wants

Every docs directory moves under 1-getting-started, 2-handbook,
4-implementation or 5-project; the options reference (section 3) comes from
the website and has no directory here. trust-boundary stays whole under the
handbook for now. web-ui, swarm and tools split between handbook and
implementation, and the command-line references move to
2-handbook/reference. Links, path references in code and nix, and the docs
index follow the moves; no page content changes.
This commit is contained in:
iris 2026-11-06 18:30:12 +01:00 • committed by mara
commit 6739bb903d

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@ -79,7 +79,7 @@ pub(super) async fn post_login_cancel(State(state): State<AppState>) -> Response
/// The turn loop's next iteration parks into `wait_for_login` which
/// resumes when a fresh credentials file appears via `/login/code`.
/// Always returns 200 with a body describing what happened. See
/// `docs/web-ui/agent.md::Per-agent endpoints`
/// `docs/2-handbook/web-ui/agent.md::Per-agent endpoints`
/// (the `/api/logout` bullet) for the three-step rationale +
/// preservation invariants.
pub(super) async fn post_logout(State(state): State<AppState>) -> Response {