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docs: sort the top-level directories into five sections by what the reader wants

Every docs directory moves under 1-getting-started, 2-handbook,
4-implementation or 5-project; the options reference (section 3) comes from
the website and has no directory here. trust-boundary stays whole under the
handbook for now. web-ui, swarm and tools split between handbook and
implementation, and the command-line references move to
2-handbook/reference. Links, path references in code and nix, and the docs
index follow the moves; no page content changes.
This commit is contained in:
iris 2026-11-06 18:30:12 +01:00 • committed by mara
commit 6739bb903d

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@ -23,7 +23,7 @@ use crate::mcp_config;
// auto-compaction and its cross-session auto-memory because hyperhive owns those
// concerns (`/compact` on overflow, notes persistence under `/state`). How the
// file is wired (the nix asset) + the full rationale live in
// `docs/turn-loop/claude-invocation.md`. Unknown keys are silently ignored by
// `docs/4-implementation/turn-loop/claude-invocation.md`. Unknown keys are silently ignored by
// claude-code; if a key gets renamed we'll spot it because the corresponding
// behavior will start firing mid-turn again.