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docs: sort the top-level directories into five sections by what the reader wants

Every docs directory moves under 1-getting-started, 2-handbook,
4-implementation or 5-project; the options reference (section 3) comes from
the website and has no directory here. trust-boundary stays whole under the
handbook for now. web-ui, swarm and tools split between handbook and
implementation, and the command-line references move to
2-handbook/reference. Links, path references in code and nix, and the docs
index follow the moves; no page content changes.
This commit is contained in:
iris 2026-11-06 18:30:12 +01:00 • committed by mara
commit 6739bb903d

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@ -88,7 +88,7 @@ fn effort_from(configured: Option<&str>, file: Option<String>) -> (String, Sourc
// (`hyperhive-rate-limited`, `hyperhive-needs-login`) that grew organically
// and had no shared schema. A single JSON file is self-documenting, atomic
// to write, and cheaper for hive-c0re to read on each sweep (one fopen vs
// two stat calls). See `docs/agent-lifecycle/persistence.md::Harness state files`.
// two stat calls). See `docs/2-handbook/agent-lifecycle/persistence.md::Harness state files`.
//
// Legacy sentinel files written by older harness builds are still honoured
// by `read_harness_state` so in-place upgrades don't lose state (the new