docs: sort the top-level directories into five sections by what the reader wants
Every docs directory moves under 1-getting-started, 2-handbook, 4-implementation or 5-project; the options reference (section 3) comes from the website and has no directory here. trust-boundary stays whole under the handbook for now. web-ui, swarm and tools split between handbook and implementation, and the command-line references move to 2-handbook/reference. Links, path references in code and nix, and the docs index follow the moves; no page content changes.
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@ -31,7 +31,7 @@ import { el } from "../dom.js";
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import { attachShadowCss } from "../shadow-css.js";
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import sidePanelCss from "./hive-side-panel.css";
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// See docs/web-ui/agent.md::Side panel for the hit-strip + pointer-capture +
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// See docs/2-handbook/web-ui/agent.md::Side panel for the hit-strip + pointer-capture +
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// localStorage persistence model; CSS clamps the stored value to min
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// 320px / max 96vw and out-of-range stored values are dropped silently.
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// Shared by both packages deliberately — see module header.
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