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docs: sort the top-level directories into five sections by what the reader wants

Every docs directory moves under 1-getting-started, 2-handbook,
4-implementation or 5-project; the options reference (section 3) comes from
the website and has no directory here. trust-boundary stays whole under the
handbook for now. web-ui, swarm and tools split between handbook and
implementation, and the command-line references move to
2-handbook/reference. Links, path references in code and nix, and the docs
index follow the moves; no page content changes.
This commit is contained in:
iris 2026-11-06 18:30:12 +01:00 • committed by mara
commit 6739bb903d

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@ -165,7 +165,7 @@
<!-- Selection action bar. Sticky-bottom strip that slides into
view when one or more agent cards is selected (click the icon
to toggle). See docs/web-ui/dashboard.md::Selection bar for the bulk
to toggle). See docs/2-handbook/web-ui/dashboard.md::Selection bar for the bulk
action gating + clear semantics. -->
<div
id="selection-bar"