docs: sort the top-level directories into five sections by what the reader wants
Every docs directory moves under 1-getting-started, 2-handbook, 4-implementation or 5-project; the options reference (section 3) comes from the website and has no directory here. trust-boundary stays whole under the handbook for now. web-ui, swarm and tools split between handbook and implementation, and the command-line references move to 2-handbook/reference. Links, path references in code and nix, and the docs index follow the moves; no page content changes.
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esbuild emits it as its own `dist/static/theme.css`, linked by every
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agent page right after colors.css. The base16 slots it derives from
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live in colors.css (the swap contract); a theme swap replaces only
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that file. See @hive/shared/theme.css + docs/web-ui/css-vars.md. */
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that file. See @hive/shared/theme.css + docs/4-implementation/web-ui/css-vars.md. */
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@import "@hive/shared/theme.css";
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