docs: persistence and config changes become one operator page
The operator parts of the persistence and config-changes pages merge into agents/persistence.md. The sqlite tables, state dirs, mounts and migrations move to 4-implementation/agent-state/persistence.md, and the deploy path, meta flake, deploy markers, startup migrations, root container, system messages and autoupdate move to 4-implementation/agent-state/config-changes.md. Links, code comments and nix comments that named the old sections point at the new pages.
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@ -302,7 +302,7 @@ in
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# Long-running matrix-sdk client + sync per agent. Serves the MCP
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# tools directly over streamable-http + emits hyperhive wake
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# signals on incoming room events via `/run/hive/mcp.sock`. See
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# `docs/2-handbook/agents/persistence.md::Matrix per-agent daemon + token-arrival
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# `docs/4-implementation/agent-state/persistence.md::Matrix per-agent daemon + token-arrival
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# trigger` for the first-boot-ordering rationale.
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systemd.services.hive-matrix-daemon = lib.mkIf matrixEnabled {
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description = "long-running matrix-sdk Client + MCP daemon";
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@ -434,7 +434,7 @@ in
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# `tokenFile`, or a `main` from before the swarm minted it). Without this
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# the daemon would exit 0 silently on first boot and the MCP
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# would have no backend until next restart. See
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# `docs/2-handbook/agents/persistence.md` (same section as above).
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# `docs/4-implementation/agent-state/persistence.md` (same section as above).
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systemd.paths.hive-matrix-daemon = lib.mkIf matrixEnabled {
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description = "trigger hive-matrix-daemon when a matrix token appears";
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wantedBy = [ "multi-user.target" ];
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