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docs: persistence and config changes become one operator page

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The operator parts of the persistence and config-changes pages merge into
agents/persistence.md. The sqlite tables, state dirs, mounts and migrations move
to 4-implementation/agent-state/persistence.md, and the deploy path, meta flake,
deploy markers, startup migrations, root container, system messages and
autoupdate move to 4-implementation/agent-state/config-changes.md. Links, code
comments and nix comments that named the old sections point at the new pages.
This commit is contained in:
iris 2026-11-10 22:22:06 +01:00 • committed by mara
commit 0ae34b1cd0
1 changed files with 919 additions and 881 deletions
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2
nix/agent-modules/agent-service.nix
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@ -189,7 +189,7 @@ in
not `state/` — `harness/` survives container rebuilds exactly like
`state/` does, but is never bind-mounted into another agent's
container (unlike `state/`, which a `ManageRootAgent` holder gets
read-write for recovery — see `docs/2-handbook/agents/persistence.md`'s "Cross-agent access to
read-write for recovery — see `docs/4-implementation/agent-state/persistence.md`'s "Cross-agent access to
state"), so this credential is reachable by nothing but this agent
and the host. Permissions should be `0600`, owned by the agent's
unix user. Whatever owner it was installed with, the file becomes