docs: persistence and config changes become one operator page
The operator parts of the persistence and config-changes pages merge into agents/persistence.md. The sqlite tables, state dirs, mounts and migrations move to 4-implementation/agent-state/persistence.md, and the deploy path, meta flake, deploy markers, startup migrations, root container, system messages and autoupdate move to 4-implementation/agent-state/config-changes.md. Links, code comments and nix comments that named the old sections point at the new pages.
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@ -88,7 +88,7 @@ fn effort_from(configured: Option<&str>, file: Option<String>) -> (String, Sourc
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// (`hyperhive-rate-limited`, `hyperhive-needs-login`) that grew organically
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// and had no shared schema. A single JSON file is self-documenting, atomic
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// to write, and cheaper for hive-c0re to read on each sweep (one fopen vs
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// two stat calls). See `docs/2-handbook/agents/persistence.md::Harness state files`.
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// two stat calls). See `docs/4-implementation/agent-state/persistence.md::Harness state files`.
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//
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// Legacy sentinel files written by older harness builds are still honoured
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// by `read_harness_state` so in-place upgrades don't lose state (the new
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