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docs: persistence and config changes become one operator page

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The operator parts of the persistence and config-changes pages merge into
agents/persistence.md. The sqlite tables, state dirs, mounts and migrations move
to 4-implementation/agent-state/persistence.md, and the deploy path, meta flake,
deploy markers, startup migrations, root container, system messages and
autoupdate move to 4-implementation/agent-state/config-changes.md. Links, code
comments and nix comments that named the old sections point at the new pages.
This commit is contained in:
iris 2026-11-10 22:22:06 +01:00 • committed by mara
commit 0ae34b1cd0
1 changed files with 919 additions and 881 deletions
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docs/5-project/process/gotchas.md
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@ -205,7 +205,7 @@ durable knowledge here (`notes.md`, anything else) — the harness's own
internal files (`hyperhive-events.sqlite`, `hyperhive-turn-stats.sqlite`,
`hyperhive-model`) live in the separate `harness` dir instead, so they
don't clutter what claude sees as "my notes dir" (see
[`docs/2-handbook/agents/persistence.md`](../../2-handbook/agents/persistence.md)). Survives `destroy`/recreate
[`docs/4-implementation/agent-state/persistence.md`](../../4-implementation/agent-state/persistence.md)). Survives `destroy`/recreate
alongside the claude dir.
### Persistent work dir per agent