docs: persistence and config changes become one operator page
The operator parts of the persistence and config-changes pages merge into agents/persistence.md. The sqlite tables, state dirs, mounts and migrations move to 4-implementation/agent-state/persistence.md, and the deploy path, meta flake, deploy markers, startup migrations, root container, system messages and autoupdate move to 4-implementation/agent-state/config-changes.md. Links, code comments and nix comments that named the old sections point at the new pages.
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@ -216,7 +216,7 @@ agent's durable bind-mounted dir. AGENTS.md autoload walks
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upward from `/state` — drop a per-agent AGENTS.md there if you
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want long-term hints that survive destroy/recreate. A `CLAUDE.md`
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in `/state` or above it shadows `AGENTS.md`: claude then loads only
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the `CLAUDE.md` (see `docs/2-handbook/agents/persistence.md` for the
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the `CLAUDE.md` (see `docs/4-implementation/agent-state/persistence.md` for the
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boot-time rename).
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The wake prompt is intentionally minimal: the popped message's
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