docs: persistence and config changes become one operator page
The operator parts of the persistence and config-changes pages merge into agents/persistence.md. The sqlite tables, state dirs, mounts and migrations move to 4-implementation/agent-state/persistence.md, and the deploy path, meta flake, deploy markers, startup migrations, root container, system messages and autoupdate move to 4-implementation/agent-state/config-changes.md. Links, code comments and nix comments that named the old sections point at the new pages.
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@ -42,7 +42,7 @@ root:root`, no symlink followed) and leaves an existing one alone. The
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container's own activation (`hive-agent-user-migrate`) then chowns it to
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the agent user and sets `0751`. Without a user namespace
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that uid is the host inode's owner. (A namespaced agent, see "User namespace" in
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`docs/2-handbook/agents/persistence.md`, gets the dir from `EnsureAgentSocketDir`
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`docs/4-implementation/agent-state/persistence.md`, gets the dir from `EnsureAgentSocketDir`
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owned by its data owner instead, because the container can't chown through
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the id map.) Don't add another host-side chown or chmod:
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two owners of one path revert each other. Until the container activates,
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