docs: persistence and config changes become one operator page
The operator parts of the persistence and config-changes pages merge into agents/persistence.md. The sqlite tables, state dirs, mounts and migrations move to 4-implementation/agent-state/persistence.md, and the deploy path, meta flake, deploy markers, startup migrations, root container, system messages and autoupdate move to 4-implementation/agent-state/config-changes.md. Links, code comments and nix comments that named the old sections point at the new pages.
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@ -45,7 +45,7 @@ agent's `state` dir, read-write, at `/agents/<name>/state`; never `config` or
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`harness`). An agent holding no permission sees its own dirs and nothing else:
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`ManageRootAgent` is the only grant that reaches another agent's state
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dir. See
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[`persistence.md`](persistence.md)'s _Cross-agent access to state._
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[`persistence.md`](../../4-implementation/agent-state/persistence.md)'s _Cross-agent access to state._
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### Reading the map-shaped format
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