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docs: persistence and config changes become one operator page

The operator parts of the persistence and config-changes pages merge into
agents/persistence.md. The sqlite tables, state dirs, mounts and migrations move
to 4-implementation/agent-state/persistence.md, and the deploy path, meta flake,
deploy markers, startup migrations, root container, system messages and
autoupdate move to 4-implementation/agent-state/config-changes.md. Links, code
comments and nix comments that named the old sections point at the new pages.
This commit is contained in:
iris 2026-11-10 22:22:06 +01:00 • committed by mara
commit 0ae34b1cd0

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@ -192,7 +192,7 @@ pick the page for your task rather than reading front to back. Some
common entry points:
- connecting hives into a swarm → [`2-handbook/swarm/`](docs/2-handbook/swarm/README.md)
- how config changes flow → [`2-handbook/agents/config-changes.md`](docs/2-handbook/agents/config-changes.md)
- how config changes flow → [`2-handbook/agents/persistence.md`](docs/2-handbook/agents/persistence.md#config-changes)
- trust boundary + threat model → [`hives/boundary.md`](docs/2-handbook/hives/boundary.md), [`agents/security.md`](docs/2-handbook/agents/security.md)
- what an agent's turn looks like → [`4-implementation/turn-loop/`](docs/4-implementation/turn-loop/README.md)
- every `services.hyperhive.*` option → [options reference](https://hyperhive.darkest.space/options/)