docs: persistence and config changes become one operator page
The operator parts of the persistence and config-changes pages merge into agents/persistence.md. The sqlite tables, state dirs, mounts and migrations move to 4-implementation/agent-state/persistence.md, and the deploy path, meta flake, deploy markers, startup migrations, root container, system messages and autoupdate move to 4-implementation/agent-state/config-changes.md. Links, code comments and nix comments that named the old sections point at the new pages.
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@ -15,11 +15,9 @@ docs/4-implementation/agent-tools/swarm-metrics-cli.md
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# indentation normalisation, so these files need manual re-wrap before
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# adding them back to the formatter scope.
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AGENTS.md
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docs/2-handbook/agents/config-changes.md
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docs/5-project/process/conventions.md
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docs/4-implementation/networking/gateway.md
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docs/2-handbook/swarm/matrix.md
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docs/2-handbook/agents/persistence.md
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docs/4-implementation/web-ui/terminal-rendering.md
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docs/4-implementation/agent-tools/forge.md
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docs/4-implementation/agent-tools/matrix.md
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